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The Space and Motion of Communicating Agents
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Scalable simulation of cellular signaling networks
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LICS '10 Proceedings of the 2010 25th Annual IEEE Symposium on Logic in Computer Science
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ESOP'11/ETAPS'11 Proceedings of the 20th European conference on Programming languages and systems: part of the joint European conferences on theory and practice of software
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CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
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Various calculi have been proposed to model different levels of abstraction of cell signaling and molecular interactions. In this paper we propose a framework inspired by some of these calculi that structures interactions and agents from the most basic elements of the cell (protein interaction sites) to higher order ones (compartments and molecular species).