Living cell as a universal computer
Cybernetics and Systems Analysis
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A new method to model intracellular reactions coordinated by proteins is discussed. Proteins are described using locally interacting charged particles. The interaction is defined algorithmically, which allows disregarding the physical nature of protein activity in the analysis of the processes. Based on the proposed approach, a modeling software environment was developed and used as an example to analyze the process of formation of the hydrophobic core of a protein globule in water.