Characterizing output bottlenecks in a supercomputer

  • Authors:
  • Bing Xie;Jeffrey Chase;David Dillow;Oleg Drokin;Scott Klasky;Sarp Oral;Norbert Podhorszki

  • Affiliations:
  • Duke University, Durham, NC;Duke University, Durham, NC;Oak Ridge National Laboratory, Oak Ridge, TN;Intel Corporation, Knoxville, TN;Oak Ridge National Laboratory, Oak Ridge, TN;Oak Ridge National Laboratory, Oak Ridge, TN;Oak Ridge National Laboratory, Oak Ridge, TN

  • Venue:
  • SC '12 Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis
  • Year:
  • 2012

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Abstract

Supercomputer I/O loads are often dominated by writes. HPC (High Performance Computing) file systems are designed to absorb these bursty outputs at high bandwidth through massive parallelism. However, the delivered write bandwidth often falls well below the peak. This paper characterizes the data absorption behavior of a center-wide shared Lustre parallel file system on the Jaguar supercomputer. We use a statistical methodology to address the challenges of accurately measuring a shared machine under production load and to obtain the distribution of bandwidth across samples of compute nodes, storage targets, and time intervals. We observe and quantify limitations from competing traffic, contention on storage servers and I/O routers, concurrency limitations in the client compute node operating systems, and the impact of variance (stragglers) on coupled output such as striping. We then examine the implications of our results for application performance and the design of I/O middleware systems on shared supercomputers.