PubAnnotation: a persistent and sharable corpus and annotation repository

Authors:
Jin-Dong Kim;Yue Wang
Affiliations:
Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS), Yayoi, Bunkyo-ku, Tokyo, Japan;Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS), Yayoi, Bunkyo-ku, Tokyo, Japan
Venue:
BioNLP '12 Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Year:
2012

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Abstract

There has been an active development of corpora and annotations in the BioNLP community. As those resources accumulate, a new issue arises about the reusability. As a solution to improve the reusability of corpora and annotations, we present PubAnnotation, a persistent and sharable repository, where various corpora and annotations can be stored together in a stable and comparable way. As a position paper, it explains the motivation and the core concepts of the repository and presents a prototype repository as a proof-of-concept.