The monadic second-order logic of graphs. I. recognizable sets of finite graphs
Information and Computation
Easy problems for tree-decomposable graphs
Journal of Algorithms
Journal of the ACM (JACM)
Tight Lower Bounds for Certain Parameterized NP-Hard Problems
CCC '04 Proceedings of the 19th IEEE Annual Conference on Computational Complexity
Parameterized Complexity Theory (Texts in Theoretical Computer Science. An EATCS Series)
Parameterized Complexity Theory (Texts in Theoretical Computer Science. An EATCS Series)
Improved approximation algorithm for convex recoloring of trees
WAOA'05 Proceedings of the Third international conference on Approximation and Online Algorithms
Convex recolorings of strings and trees: definitions, hardness results and algorithms
WADS'05 Proceedings of the 9th international conference on Algorithms and Data Structures
Quadratic kernelization for convex recoloring of trees
COCOON'07 Proceedings of the 13th annual international conference on Computing and Combinatorics
Parameterized Complexity
A 2O (k)poly(n) algorithm for the parameterized Convex Recoloring problem
Information Processing Letters
Convex Recoloring Revisited: Complexity and Exact Algorithms
COCOON '09 Proceedings of the 15th Annual International Conference on Computing and Combinatorics
On the complexity of some colorful problems parameterized by treewidth
COCOA'07 Proceedings of the 1st international conference on Combinatorial optimization and applications
Parameterized complexity of the smallest degree-constrained subgraph problem
IWPEC'08 Proceedings of the 3rd international conference on Parameterized and exact computation
Speeding up dynamic programming for some NP-hard graph recoloring problems
TAMC'08 Proceedings of the 5th international conference on Theory and applications of models of computation
On the complexity of some colorful problems parameterized by treewidth
Information and Computation
Upper and lower bounds for finding connected motifs in vertex-colored graphs
Journal of Computer and System Sciences
Partial convex recolorings of trees and galled networks: Tight upper and lower bounds
ACM Transactions on Algorithms (TALG)
Parameterized complexity of finding small degree-constrained subgraphs
Journal of Discrete Algorithms
The complexity of minimum convex coloring
Discrete Applied Mathematics
Quadratic kernelization for convex recoloring of trees
COCOON'07 Proceedings of the 13th annual international conference on Computing and Combinatorics
Discrete Applied Mathematics
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An r-component connected coloring of a graph is a coloring of the vertices so that each color class induces a subgraph having at most r connected components. The concept has been well-studied for r = 1, in the case of trees, under the rubric of convex coloring, used in modeling perfect phylogenies. Several applications in bioinformatics of connected coloring problems on general graphs are discussed, including analysis of protein-protein interaction networks and protein structure graphs, and of phylogenetic relationships modeled by splits trees. We investigate the r-COMPONENT CONNECTED COLORING COMPLETION (r-CCC) problem, that takes as input a partially colored graph, having k uncolored vertices, and asks whether the partial coloring can be completed to an r-component connected coloring. For r = 1 this problem is shown to be NPhard, but fixed-parameter tractable when parameterized by the number of uncolored vertices, solvable in time O*(8k). We also show that the 1-CCC problem, parameterized (only) by the treewidth t of the graph, is fixed-parameter tractable; we show this by a method that is of independent interest. The r-CCC problem is shown to be W[1]-hard, when parameterized by the treewidth bound t, for any r = 2. Our proof also shows that the problem is NP-complete for r = 2, for general graphs.