Discrete Mathematics
Reversals and Transpositions Over Finite Alphabets
SIAM Journal on Discrete Mathematics
Assignment of Orthologous Genes via Genome Rearrangement
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Prefix Reversals on Binary and Ternary Strings
SIAM Journal on Discrete Mathematics
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The problem of sorting by prefix transpositions asks for the minimum number of prefix transpositions required to sort the elements of a given permutation. In this paper, we study a variant of this problem where the prefix transpositions act not on permutations but on strings over an alphabet of fixed size. Here, we determine the minimum number of prefix transpositions required to sort the binary and ternary strings, with polynomial time algorithms for these sorting problems.