The ant colony optimization meta-heuristic
New ideas in optimization
Ant Colony Optimization for Genome-Wide Genetic Analysis
ANTS '08 Proceedings of the 6th international conference on Ant Colony Optimization and Swarm Intelligence
Ant colony optimisation to identify genetic variant association with type 2 diabetes
Information Sciences: an International Journal
Exploiting expert knowledge in genetic programming for genome-wide genetic analysis
PPSN'06 Proceedings of the 9th international conference on Parallel Problem Solving from Nature
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In this paper an ant colony optimisation approach for the discovery of gene-gene interactions in genome-wide association study (GWAS) data is proposed. The subset-based approach includes a novel encoding mechanism and tournament selection to analyse full scale GWAS data consisting of hundreds of thousands of variables to discover associations between combinations of small DNA changes and Type II diabetes. The method is tested on a large established database from the Wellcome Trust Case Control Consortium and is shown to discover combinations that are statistically significant and biologically relevant within reasonable computational time.