C4.5: programs for machine learning
C4.5: programs for machine learning
A decision-theoretic generalization of on-line learning and an application to boosting
Journal of Computer and System Sciences - Special issue: 26th annual ACM symposium on the theory of computing & STOC'94, May 23–25, 1994, and second annual Europe an conference on computational learning theory (EuroCOLT'95), March 13–15, 1995
BoosTexter: A Boosting-based Systemfor Text Categorization
Machine Learning - Special issue on information retrieval
Knowledge Discovery in Multi-label Phenotype Data
PKDD '01 Proceedings of the 5th European Conference on Principles of Data Mining and Knowledge Discovery
Multilabel Neural Networks with Applications to Functional Genomics and Text Categorization
IEEE Transactions on Knowledge and Data Engineering
LIBSVM: A library for support vector machines
ACM Transactions on Intelligent Systems and Technology (TIST)
Multitask Learning for Protein Subcellular Location Prediction
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Subcellular Localization Prediction through Boosting Association Rules
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Computational Biology and Chemistry
Cost-Sensitive Multi-Label Learning for Audio Tag Annotation and Retrieval
IEEE Transactions on Multimedia
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Prediction of protein subcellular localization is an important but challenging problem, particularly when proteins may simultaneously exist at, or move between, two or more different subcellular location sites. Most of the existing protein subcellular localization methods are only used to deal with the single-location proteins. In the past few years, only a few methods have been proposed to tackle proteins with multiple locations. However, they only adopt a simple strategy, that is, transforming the multilocation proteins to multiple proteins with single location, which does not take correlations among different subcellular locations into account. In this paper, a novel method named random label selection (RALS) (multilabel learning via RALS), which extends the simple binary relevance (BR) method, is proposed to learn from multilocation proteins in an effective and efficient way. RALS does not explicitly find the correlations among labels, but rather implicitly attempts to learn the label correlations from data by augmenting original feature space with randomly selected labels as its additional input features. Through the fivefold cross-validation test on a benchmark data set, we demonstrate our proposed method with consideration of label correlations obviously outperforms the baseline BR method without consideration of label correlations, indicating correlations among different subcellular locations really exist and contribute to improvement of prediction performance. Experimental results on two benchmark data sets also show that our proposed methods achieve significantly higher performance than some other state-of-the-art methods in predicting subcellular multilocations of proteins. The prediction web server is available at http://levis.tongji.edu.cn:8080/bioinfo/MLPred-Euk/ for the public usage.