SDS: a framework for scientific data services

  • Authors:

  • Bin Dong;Surendra Byna;Kesheng Wu

  • Affiliations:

  • Lawrence Berkeley National Laboratory, Berkeley, CA;Lawrence Berkeley National Laboratory, Berkeley, CA;Lawrence Berkeley National Laboratory, Berkeley, CA

  • Venue:
  • PDSW '13 Proceedings of the 8th Parallel Data Storage Workshop
  • Year:
  • 2013

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Abstract

Large-scale scientific applications typically write their data to parallel file systems with organizations designed to achieve fast write speeds. Analysis tasks frequently read the data in a pattern that is different from the write pattern, and therefore experience poor I/O performance. In this paper, we introduce a prototype framework for bridging the performance gap between write and read stages of data access from parallel file systems. We call this framework Scientific Data Services, or SDS for short. This initial implementation of SDS focuses on reorganizing previously written files into data layouts that benefit read patterns, and transparently directs read calls to the reorganized data. SDS follows a client-server architecture. The SDS Server manages partial or full replicas of reorganized datasets and serves SDS Clients' requests for data. The current version of the SDS client library supports HDF5 programming interface for reading data. The client library intercepts HDF5 calls using the HDF5 Virtual Object Layer (VOL) and transparently redirects them to the reorganized data. The SDS client library also provides a querying interface for reading part of the data based on user-specified selective criteria. We describe the design and implementation of the SDS client-server architecture, and evaluate the response time of the SDS Server and the performance benefits of SDS.