Artificial intelligence and molecular biology
Artificial intelligence and molecular biology
Parallel Computing - Special issue on cellular automata: from modeling to applications
Introduction to Parallel Processing: Algorithms and Architectures
Introduction to Parallel Processing: Algorithms and Architectures
Multi-Objective Optimization Using Evolutionary Algorithms
Multi-Objective Optimization Using Evolutionary Algorithms
Brook for GPUs: stream computing on graphics hardware
ACM SIGGRAPH 2004 Papers
A parallel hybrid genetic algorithm for protein structure prediction on the computational grid
Future Generation Computer Systems
A performance study of general-purpose applications on graphics processors using CUDA
Journal of Parallel and Distributed Computing
Parallel Computing Experiences with CUDA
IEEE Micro
An Improved Tabu Search Algorithm for 3D Protein Folding Problem
PRICAI '08 Proceedings of the 10th Pacific Rim International Conference on Artificial Intelligence: Trends in Artificial Intelligence
Parallel Calculating of the Goal Function in Metaheuristics Using GPU
ICCS '09 Proceedings of the 9th International Conference on Computational Science: Part I
Music-Inspired Harmony Search Algorithm: Theory and Applications
Music-Inspired Harmony Search Algorithm: Theory and Applications
Massively parallel forward modeling of scalar and tensor gravimetry data
Computers & Geosciences
A hybrid immune-based system for the protein folding problem
EvoCOP'07 Proceedings of the 7th European conference on Evolutionary computation in combinatorial optimization
GPU-accelerated molecular dynamics simulation for study of liquid crystalline flows
Journal of Computational Physics
A differential evolution approach for protein structure optimisation using a 2D off-lattice model
International Journal of Bio-Inspired Computation
Computer Methods and Programs in Biomedicine
High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster
Journal of Computational Physics
New inspirations in swarm intelligence: a survey
International Journal of Bio-Inspired Computation
Parallel genetic algorithms on programmable graphics hardware
ICNC'05 Proceedings of the First international conference on Advances in Natural Computation - Volume Part III
EC'05 Proceedings of the 3rd European conference on Applications of Evolutionary Computing
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This work presents a new evolutionary algorithm based on the standard harmony search strategy, called population-based harmony search PBHS. Also, this work provides a parallelisation method for the proposed PBHS by using graphical processing units GPU, allowing multiple function evaluations at the same time. Experiments were done using a benchmark of a hard scientific problem: protein structure prediction with the AB-2D off-lattice model. The performance and the solution quality were evaluated and compared using four implementations: two concerning the standard HS, one running in CPU and another running in GPU, and two implementations concerning the PBHS, also running in CPU and in GPU. Results show that the quality of solutions and speed-ups achieved by the PBHS is significantly better than the HS.