Approximating Shortest Superstrings

  • Authors:
  • Shang-Hua Teng;Frances F. Yao

  • Affiliations:
  • -;-

  • Venue:
  • SIAM Journal on Computing
  • Year:
  • 1997

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Abstract

The shortest-superstring problem is to find a shortest possible string that contains every string in a given set as substrings. This problem has applications to data compression and DNA sequencing. Since the problem is NP-hard and MAX SNP-hard, approximation algorithms are of interest. We present a new algorithm which always finds a superstring that is at most 2.89 times as long as the shortest superstring. Our result improves the $3$-approximation result of Blum et al.