Combinatorics of RNA secondary structures

Networks in molecular evolution

Complexity - Special issue: Selection, tinkering, and emergence in complex networks

Reduction of m-regular noncrossing partitions

European Journal of Combinatorics

Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov-Jacobson energy model

Discrete Applied Mathematics

Controlled non-uniform random generation of decomposable structures

Theoretical Computer Science

Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

The Forward Stem Matrix: An Efficient Data Structure for Finding Hairpins in RNA Secondary Structures

Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)