Absolute convergence: true trees from short sequences
SODA '01 Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms
Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining
SODA '01 Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms
Combining polynomial running time and fast convergence for the disk-covering method
Journal of Computer and System Sciences - Computational biology 2002
On the complexity of distance-based evolutionary tree reconstruction
SODA '03 Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms
Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites
WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics
The Performance of Phylogenetic Methods on Trees of Bounded Diameter
WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics
Sequence-Length Requirements for Phylogenetic Methods
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
Reconstructing optimal phylogenetic trees: a challenge in experimental algorithmics
Experimental algorithmics
Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining
Journal of Algorithms - Special issue: Twelfth annual ACM-SIAM symposium on discrete algorithms
Learning nonsingular phylogenies and hidden Markov models
Proceedings of the thirty-seventh annual ACM symposium on Theory of computing
Optimal phylogenetic reconstruction
Proceedings of the thirty-eighth annual ACM symposium on Theory of computing
Using Max Cut to Enhance Rooted Trees Consistency
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Analytic solutions for three taxon ML trees with variable rates across sites
Discrete Applied Mathematics
A polynomial time algorithm for the minimum quartet inconsistency problem with O(n) quartet errors
Information Processing Letters
Distorted Metrics on Trees and Phylogenetic Forests
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Quartet-Based Phylogeny Reconstruction with Answer Set Programming
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
On the hardness of inferring phylogenies from triplet-dissimilarities
Theoretical Computer Science
Fast and reliable reconstruction of phylogenetic trees with very short edges
Proceedings of the nineteenth annual ACM-SIAM symposium on Discrete algorithms
International Journal of Bioinformatics Research and Applications
The Complexity of Distinguishing Markov Random Fields
APPROX '08 / RANDOM '08 Proceedings of the 11th international workshop, APPROX 2008, and 12th international workshop, RANDOM 2008 on Approximation, Randomization and Combinatorial Optimization: Algorithms and Techniques
Reconstruction of Markov Random Fields from Samples: Some Observations and Algorithms
APPROX '08 / RANDOM '08 Proceedings of the 11th international workshop, APPROX 2008, and 12th international workshop, RANDOM 2008 on Approximation, Randomization and Combinatorial Optimization: Algorithms and Techniques
Shrinkage Effect in Ancestral Maximum Likelihood
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Robustness of Topological Supertree Methods for Reconciling Dense Incompatible Data
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Theoretical Computer Science
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep
RECOMB 2'09 Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology
Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
New fixed-parameter algorithms for the minimum quartet inconsistency problem
IWPEC'08 Proceedings of the 3rd international conference on Parameterized and exact computation
Network delay inference from additive metrics
Random Structures & Algorithms
Reconstructing approximate phylogenetic trees from quartet samples
SODA '10 Proceedings of the twenty-first annual ACM-SIAM symposium on Discrete Algorithms
Quartets MaxCut: A Divide and Conquer Quartets Algorithm
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Topology discovery of sparse random graphs with few participants
ACM SIGMETRICS Performance Evaluation Review - Performance evaluation review
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions
WABI'11 Proceedings of the 11th international conference on Algorithms in bioinformatics
ICALP'05 Proceedings of the 32nd international conference on Automata, Languages and Programming
Quartet-based phylogeny reconstruction from gene orders
COCOON'05 Proceedings of the 11th annual international conference on Computing and Combinatorics
A lookahead branch-and-bound algorithm for the maximum quartet consistency problem
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
Alignment-Free phylogenetic reconstruction
RECOMB'10 Proceedings of the 14th Annual international conference on Research in Computational Molecular Biology
Maximal accurate forests from distance matrices
RECOMB'06 Proceedings of the 10th annual international conference on Research in Computational Molecular Biology
Testing consistency of quartet topologies: A parameterized approach
Information Processing Letters
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