KDE bioscience: platform for bioinformatics analysis workflows
Journal of Biomedical Informatics
Programming languages and the biological sciences
Journal of Computing Sciences in Colleges
Multiple Sequence Alignment System for Pyrosequencing Reads
BICoB '09 Proceedings of the 1st International Conference on Bioinformatics and Computational Biology
Intuitive Bioinformatics for Genomics Applications: Omega-Brigid Workflow Framework
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
Helping biologists effectively build workflows, without programming
DILS'10 Proceedings of the 7th international conference on Data integration in the life sciences
High-level execution and communication support for parallel grid applications in JGrid
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
The benefits of java and Jini in the JGrid system
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
Bioinformatics integration framework for metabolic pathway data-mining
IEA/AIE'06 Proceedings of the 19th international conference on Advances in Applied Artificial Intelligence: industrial, Engineering and Other Applications of Applied Intelligent Systems
Supporting interactive computational science applications within the JGrid infrastructure
ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part I
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BioJava is an open source Java library for bioinformatics. It is highly object oriented, allowing extensive customization without extensive code writing. The project is coordinated from the web site at http://www.biojava.org and the mailing list for related discussion is biojava-1@biojava.org.