Global Optimization For Molecular Clusters Using A New Smoothing Approach

  • Authors:
  • Chung-Shang Shao;Richard Byrd;Elizabeth Eskow;Robert B. Schnabel

  • Affiliations:
  • Department of Computer Science, University of Colorado, Boulder, CO 80309-0430, USA (e-mail: shao@matkat.cs.colorado.edu);Department of Computer Science, University of Colorado, Boulder, CO 80309-0430, USA;Department of Computer Science, University of Colorado, Boulder, CO 80309-0430, USA;Department of Computer Science, University of Colorado, Boulder, CO 80309-0430, USA

  • Venue:
  • Journal of Global Optimization
  • Year:
  • 2000

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Abstract

Strategies involving smoothing of the objective function have been used to help solve difficult global optimization problems arising in molecular chemistry. This paper proposes a new smoothing approach and examines some basic issues in smoothing for molecular configuration problems. We first propose a new, simple algebraic way of smoothing the Lennard-Jones energy function, which is an important component of the energy in many molecular models. This simple smoothing technique is shown to have close similarities to previously-proposed, spatial averaging smoothing techniques. We also present some experimental studies of the behavior of local and global minimizers under smoothing of the potential energy in Lennard-Jones problems. An examination of minimizer trajectories from these smoothed problems shows significant limitations in the use of smoothing to directly solve global optimization problems.