An overview of workflow management: from process modeling to workflow automation infrastructure
Distributed and Parallel Databases - Special issue on software support for work flow management
Managing heterogeneous multi-system tasks to support enterprise-wide operations
Distributed and Parallel Databases - Special issue on software support for work flow management
Dynamic change within workflow systems
COCS '95 Proceedings of conference on Organizational computing systems
COCS '95 Proceedings of conference on Organizational computing systems
Simulation modeling within workflow technology
WSC '95 Proceedings of the 27th conference on Winter simulation
Adept_flex—Supporting Dynamic Changes of Workflows Without Losing Control
Journal of Intelligent Information Systems - Special issue on workflow management systems
WebWork: METEOR_2‘s Web-Based Workflow Management System
Journal of Intelligent Information Systems - Special issue on workflow management systems
The Unified Modeling Language reference manual
The Unified Modeling Language reference manual
A polyhedral approach to sequence alignment problems
Discrete Applied Mathematics - Special volume on combinatorial molecular biology
Workflow Management Systems and Interoperability
Workflow Management Systems and Interoperability
Inheritance of workflows: an approach to tackling problems related to change
Theoretical Computer Science
On-the-fly calculation and verification of consistent steering transactions
Proceedings of the 2001 ACM/IEEE conference on Supercomputing
J3DV: a Java-based 3D database visualization tool
Software—Practice & Experience
Authorization and Access Control of Application Data in Workflow Systems
Journal of Intelligent Information Systems - Special issue: A survey of research questions for intelligent information systems in education
Exception Handling in Workflow Systems
Applied Intelligence
Processes Driving the Networked Economy
IEEE Concurrency
LabFlow-1: A Database Benchmark for High-Throughput Workflow Management
EDBT '96 Proceedings of the 5th International Conference on Extending Database Technology: Advances in Database Technology
Design of an Object-Oriented Database for Reverse Genetics
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology
The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories
ISMB '98 Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology
Using Flexible Transactions to Support Multi-System Telecommunication Applications
VLDB '92 Proceedings of the 18th International Conference on Very Large Data Bases
Supporting State-Wide Immunisation Tracking Using Multi-Paradigm Workflow Technology
VLDB '96 Proceedings of the 22th International Conference on Very Large Data Bases
ICEIMT '01 Proceedings of the IFIP TC5/WG5.12 International Conference on Enterprise Integration and Modeling Technique: Enterprise Inter- and Intra-Organizational Integration: Building International Consensus
Object-Orientation: A New Perspective on Strategy
AIWORC '00 Proceedings of the Academia/Industry Working Conference on Research Challenges
Experiences in Workflow Management for Scientific Computing
DEXA '97 Proceedings of the 8th International Workshop on Database and Expert Systems Applications
DEXA '97 Proceedings of the 8th International Workshop on Database and Expert Systems Applications
New computational tools for genome mapping
New computational tools for genome mapping
Workflow Management: Models, Methods, and Systems
Workflow Management: Models, Methods, and Systems
HyperThesis: the gRNA spell on the curse of bioinformatics applications integration
CIKM '03 Proceedings of the twelfth international conference on Information and knowledge management
Flexible Support of Team Processes by Adaptive Workflow Systems
Distributed and Parallel Databases
Correctness criteria for dynamic changes in workflow systems: a survey
Data & Knowledge Engineering - Special issue: Advances in business process management
Managing structural genomic workflows using web services
Data & Knowledge Engineering - Special issue: Biological data management
IT support for healthcare processes - premises, challenges, perspectives
Data & Knowledge Engineering
Integration and verification of semantic constraints in adaptive process management systems
Data & Knowledge Engineering
Data & Knowledge Engineering
Flexible provisioning of web service workflows
ACM Transactions on Internet Technology (TOIT)
KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
Computers & Mathematics with Applications
Comprehensive life cycle support for access rules in information systems: the CEOSIS project
Enterprise Information Systems - Towards Model-driven Service-oriented Enterprise Computing - 12th International IEEE EDOC Enterprise Computing Conference (EDOC 2008)
A workflow management and grid computing approach to molecular simulation-based bio/nano experiments
ICCS'03 Proceedings of the 2003 international conference on Computational science
A formal framework for adaptive access control models
Journal on data semantics IX
Semantic correctness in adaptive process management systems
BPM'06 Proceedings of the 4th international conference on Business Process Management
On representing, purging, and utilizing change logs in process management systems
BPM'06 Proceedings of the 4th international conference on Business Process Management
Parallelism in bioinformatics workflows
VECPAR'04 Proceedings of the 6th international conference on High Performance Computing for Computational Science
Process Evolution in a Distributed Process Execution Environment
International Journal of Information System Modeling and Design
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A large genomics project involves a significant number of researchers and technicians performing dozens of tasks, either manual (e.g. performing laboratory experiments), computer assisted (e.g. looking for genes in the GENBANK database), or sometimes performed entirely automatically by the computer (e.g. sequence assembly). It has become apparent that managing such projects poses overwhelming problems and may lead to results of lower or even unacceptable quality, or possibly drastically increased project costs. In this paper, we present a design and an initial implementation of a distributed workflow system created to schedule and support activities in a genomics laboratory. The focus of the activities in the laboratory is the discovery of protein-protein interactions of fungi, specifically Neurospora crassa. We present our approach of developing, adapting and applying workflow technology in the genomics lab and illustrate it using one distinct part of a larger workflow to discover protein-protein interactions. Novel features of our system include the ability to monitor the quality and timeliness of the results and if necessary, suggesting and incorporating changes to the selected tasks and their scheduling.