Algorithms for approximate string matching
Information and Control
An improved algorithm for computing the edit distance of run-length coded strings
Information Processing Letters
Matching for run-length encoded strings
Journal of Complexity
A sub-quadratic sequence alignment algorithm for unrestricted cost matrices
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Approximate Matching of Run-Length Compressed Strings
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
Information Processing Letters
Edit distance for a run-length-encoded string and an uncompressed string
Information Processing Letters
The SBC-tree: an index for run-length compressed sequences
EDBT '08 Proceedings of the 11th international conference on Extending database technology: Advances in database technology
Computing similarity of run-length encoded strings with affine gap penalty
Theoretical Computer Science
Sequence Alignment Algorithms for Run-Length-Encoded Strings
COCOON '08 Proceedings of the 14th annual international conference on Computing and Combinatorics
Information Processing Letters
Approximate Matching for Run-Length Encoded Strings Is 3sum-Hard
CPM '09 Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching
A fully compressed algorithm for computing the edit distance of run-length encoded strings
ESA'10 Proceedings of the 18th annual European conference on Algorithms: Part I
Random access to grammar-compressed strings
Proceedings of the twenty-second annual ACM-SIAM symposium on Discrete Algorithms
Computing similarity of run-length encoded strings with affine gap penalty
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
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Let X and Y be two run-length encoded strings, of encoded lengths k and l, respectively. We present a simple O(|X|l + |Y|k) time algorithm that computes their edit distance.