Algorithms for phylogenetic footprinting
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Finding motifs using random projections
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
From promoter sequence to expression: a probabilistic framework
Proceedings of the sixth annual international conference on Computational biology
Proceedings of the sixth annual international conference on Computational biology
Fast algorithm for extracting multiple unordered short motifs using bit operations
Information Sciences—Applications: An International Journal
Biological Sequence Data Mining
PKDD '01 Proceedings of the 5th European Conference on Principles of Data Mining and Knowledge Discovery
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics
Pattern Detection and Discovery
Proceedings of the ESF Exploratory Workshop on Pattern Detection and Discovery
Regexpcount, a symbolic package for counting problems on regular expressions and words
Fundamenta Informaticae - Special issue on computing patterns in strings
MISAE: A New Approach for Regulatory Motif Extraction
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Scalable sequential pattern mining for biological sequences
Proceedings of the thirteenth ACM international conference on Information and knowledge management
Fast and Practical Algorithms for Planted (l, d) Motif Search
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
DNA Motif Representation with Nucleotide Dependency
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Identifying Conserved Discriminative Motifs
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Computational Biology and Chemistry
Build a dictionary, learn a grammar, decipher stegoscripts, and discover genomic regulatory elements
RECOMB'05 Proceedings of the 2005 joint annual satellite conference on Systems biology and regulatory genomics
Improved pattern-driven algorithms for motif finding in DNA sequences
RECOMB'05 Proceedings of the 2005 joint annual satellite conference on Systems biology and regulatory genomics
Comparison of simple encoding schemes in GA's for the motif finding problem: preliminary results
BSB'07 Proceedings of the 2nd Brazilian conference on Advances in bioinformatics and computational biology
Speeding up exact motif discovery by bounding the expected clump size
WABI'10 Proceedings of the 10th international conference on Algorithms in bioinformatics
Graphical approach to weak motif recognition in noisy data sets
PRIB'06 Proceedings of the 2006 international conference on Pattern Recognition in Bioinformatics
MoDEL: an efficient strategy for ungapped local multiple alignment
Computational Biology and Chemistry
RECOMB'12 Proceedings of the 16th Annual international conference on Research in Computational Molecular Biology
Regexpcount, a symbolic package for counting problems on regular expressions and words
Fundamenta Informaticae - Computing Patterns in Strings
A new clustering approach for learning transcriptional modules
International Journal of Data Mining and Bioinformatics
Faster variance computation for patterns with gaps
MedAlg'12 Proceedings of the First Mediterranean conference on Design and Analysis of Algorithms
An ant colony optimization based algorithm for identifying gene regulatory elements
Computers in Biology and Medicine
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