An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification

Authors:
Thomas Hinze;Uwe Hatnik;Monika Sturm
Affiliations:
-;-;-
Venue:
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
Year:
2001

Citing 2
Cited 3

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Abstract

We present a simulation tool for frequently used DNA operations on the molecular level including side effects based on a probabilistic approach. The specification of the considered operations is directly adapted from detailed observations of molecular biological processes in laboratory studies. Bridging the gap between formal models of DNA computing, we use process description methods from biochemistry and show the closeness of the simulation to the reality.