Computer Methods and Programs in Biomedicine
Integration of biological data resources using image object keying
CBMS'03 Proceedings of the 16th IEEE conference on Computer-based medical systems
Vertical integration of bioinformatics tools and information processing on analysis outcome
ISBMDA'05 Proceedings of the 6th International conference on Biological and Medical Data Analysis
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Biological databanks have proven useful to bioscience researchers, especially in the analysis of raw data. Computational tools for sequence identification, structural analysis, and visualization have been built to access these data-banks. This paper describes a way to utilize these re-sources (both data and tools) by integrating different biological databanks into a unified XML framework. Interface to access the embedded bioinformatic tools for this common model is built by leveraging the query language of XML database management system. The proposed framework has been implemented with the emphasis of reusing the existing bioinformatic data and tools. This paper describes the overall architecture of this prototype and some design issues.