Simultaneous Classification and Feature Clustering Using Discriminant Vector Quantization with Applications to Microarray Data Analysis

Authors:
Jia Li;Hongyuan Zha
Affiliations:
-;-
Venue:
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Year:
2002

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Abstract

In many applications of supervised learning, automatic feature clustering is often desirable for a better understanding of the interaction among the various features as well as the interplay between the features and the class labels. In addition, for high dimensional data sets, feature clustering has the potential for improvement in classification accuracy and reduction incomputational complexity. In this paper, a method is developed for simultaneous classification and feature clustering by extending discriminant vector quantization (DVQ), a prototype classification method derived from the principle of minimum description length using source coding techniques. The method incorporates feature clustering with classification performedby fusing features in the same clusters. To illustrate its effectiveness, the method has been applied to microarray gene expression data for human lymphoma classification. It is demonstrated that incorporating feature clustering improves classification accuracy, and the clusters generated match well with biological meaningful gene expression signature groups.