Journal of Computational Chemistry
A query language and optimization techniques for unstructured data
SIGMOD '96 Proceedings of the 1996 ACM SIGMOD international conference on Management of data
PODS '97 Proceedings of the sixteenth ACM SIGACT-SIGMOD-SIGART symposium on Principles of database systems
Database techniques for the World-Wide Web: a survey
ACM SIGMOD Record
Comparative analysis of five XML query languages
ACM SIGMOD Record
SIGMOD '01 Proceedings of the 2001 ACM SIGMOD international conference on Management of data
Macromolecular Crystallography: Part A
Macromolecular Crystallography: Part A
ICDT '97 Proceedings of the 6th International Conference on Database Theory
Efficient Filtering of XML Documents for Selective Dissemination of Information
VLDB '00 Proceedings of the 26th International Conference on Very Large Data Bases
Informative 3D visualization of multiple protein structures
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
Building a disordered protein database: a case study in managing biological data
ADC '07 Proceedings of the eighteenth conference on Australasian database - Volume 63
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The development of high-throughput genome sequencing and protein structure determination techniques have provided researchers with a wealth of biological data. Integrated analysis of such data is difficult due to the disparate nature of the repositories used to store this biological data and of the software used for its analysis. This paper presents a framework based upon the use of semi-structured database management systems that would provide an integrated interface for the collection, storage and retrieval of biological data from existing repositories and of biological information generated by existing analysis programs. A simple implementation that integrates information from databases and analytical programs is presented as a proof of concept.