Scalable molecular dynamics for large biomolecular systems
Proceedings of the 2000 ACM/IEEE conference on Supercomputing
Parallel multigrid summation for the N-body problem
Journal of Parallel and Distributed Computing
Scalable molecular dynamics for large biomolecular systems
Scientific Programming
Acceleration of Fast Multipole Method Using Special-Purpose Computer Grape
International Journal of High Performance Computing Applications
Examining the Feasibility of Reconfigurable Models for Molecular Dynamics Simulation
ICA3PP '08 Proceedings of the 8th international conference on Algorithms and Architectures for Parallel Processing
An FPGA design to achieve fast and accurate results for molecular dynamics simulations
ISPA'07 Proceedings of the 5th international conference on Parallel and Distributed Processing and Applications
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Several variants of parallel multipole-based algorithms have been implemented to further research in fields such as computational chemistry and astro-physics. We present a distributed parallel implementation of a multipole-based algorithm that is portable to a wide variety of applications and parallel platforms. Performance data are presented for loosely coupled networks of workstations as well as for more tightly coupled distributed multiprocessors, demonstrating the portability and scalability of the application to large number of processors.