The computational linguistics of biological sequences
Artificial intelligence and molecular biology
Introduction to Formal Language Theory
Introduction to Formal Language Theory
Operations and language generating devices suggested by the genome evolution
Theoretical Computer Science
Design and implementation of a string database query language
Information Systems - Special issue: Data management in bioinformatics
Partial digest is hard to solve for erroneous input data
Theoretical Computer Science
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Formal grammars can be used to model general forms of intramolecular structure, such as secondary structure of nucleic acids. A new formalism, called cut grammar, is shown to model intermolecular assemblages such as hybridization products, as well. Formal grammars themselves can be modelled by sets of oligonucleotides, and derivations from any context-free grammar can in theory be simulated by hybridization experiments.