A brief introduction to the Phylogenetic Analysis Library version 1.5

Authors:
Matthew Goode;Korbinian Strimmer;Alexei Drummond;Ed Buckler;Allen Rodrigo
Affiliations:
University of Auckland, Auckland, New Zealand;University of Munich, Munich, Germany;Oxford University, United Kingdom;Cornell University, Ithaca, NY;University of Auckland, Auckland, New Zealand
Venue:
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
Year:
2004

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Abstract

The Phylogenetic Analysis Library (PAL) is a Java class library for performing phylogenetic inference and analysis of primarily molecular sequence data. In this paper the features of PAL are described, in particular the new features since version 1.1. Practical examples of the usage of PAL are also given.