FPGA Acceleration of Rigid Molecule Interactions

Authors:
Tom Van Court;Yongfeng Gu;Martin C. Herbordt
Affiliations:
Boston University, MA;Boston University, MA;Boston University, MA
Venue:
FCCM '04 Proceedings of the 12th Annual IEEE Symposium on Field-Programmable Custom Computing Machines
Year:
2004

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Abstract

We show how an application of central importance to computational biochemistry can be implemented efficiently on an FPGA. This requires reformulating the algorithm and taking advantage of application characteristics to maximize device utilization.