AnaGram: protein function assignment

Authors:
A. J. Pérez;G. Thode;O. Trelles
Affiliations:
Genetics Department;Genetics Department;Computer Architecture Department, University of Málaga, 29071 Málaga, Spain
Venue:
Bioinformatics
Year:
2004

Citing 0
Cited 2

Exploiting homogeneity in protein sequence clusters for construction of protein family hierarchies

Pattern Recognition
Adaptive task scheduling in computational GRID environments

EGC'05 Proceedings of the 2005 European conference on Advances in Grid Computing

Quantified Score

Hi-index	3.84

Visualization

Abstract

Summary: AnaGram is a web service for protein function assignment based on identity detection of small significant fragments (protomotifs) that can act as modular pieces in peptide construction. The system is able to assign function by finding correlations between protomotifs and functional annotations contained in SWISS-PROT and Medline databases. In addition, function ontologies are used for hierarchical organization of the predicted functions. Extensive tests have been carried out to evaluate the accuracy and performance of the system. Availability: http://jaguar.genetica.uma.es/anagram.htm