TFExplorer: integrated analysis database for predicted transcription regulatory elements

  • Authors:

  • Jinsoo Kim;Jungmin Seo;Young Seek Lee;Sangsoo Kim

  • Affiliations:

  • National Genome Information Center KRIBB, Daejeon, Korea;National Genome Information Center KRIBB, Daejeon, Korea;Department of Molecular and Life Science, Hanyang University Ansan, Kyeonggi-do, Korea;National Genome Information Center KRIBB, Daejeon, Korea

  • Venue:
  • Bioinformatics
  • Year:
  • 2005

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Abstract

Summary: TFExplorer is a web-based integrated database for predicted regulatory elements in human, mouse and rat. It shows predicted binding sites of transcription factors in the promoter regions, along with their phylogenetic footprinting information. In addition, TFExplorer can search for genes that have a given sequence pattern in their promoter regions using the motif-searching method. Availability: TFExplorer is freely available at http://mars.kribb.re.kr:8080/tfExplorer/ Contact: sskimb@kribb.re.kr