Applying GIFT, a Gene Interactions Finder in Text, to fly literature

Authors:
Núria Domedel-Puig;Lorenz Wernisch
Affiliations:
School of Crystallography, Birkbeck College, University of London Malet Street, London, WC1E 7HX, UK;School of Crystallography, Birkbeck College, University of London Malet Street, London, WC1E 7HX, UK
Venue:
Bioinformatics
Year:
2005

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Abstract

Summary: A number of freely available text mining tools have been put together to extract highly reliable Drosophila gene interaction data from text. The system has been tested with The Interactive Fly, showing low recall (27--34%), but very high precision (93--97%). Availability: The extracted data and a web interface for submission of texts to GIFT analysis are available at http://gift.cryst.bbk.ac.uk/gift Contact: n.domedel_puig@cryst.bbk.ac.uk Supplementary information: Additional documentation, such as the dictionaries and the reference sets, are available at the GIFT website.