Proceedings of the 7th conference on Information technology education
Proceedings of the 8th ACM SIGITE conference on Information technology education
Fast and accurate similarity searching of biopolymer sequences with GPU and CUDA
ICA3PP'11 Proceedings of the 11th international conference on Algorithms and architectures for parallel processing - Volume Part I
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The utilization of parallel processing in bioinformatics is a relatively new development, and wide spread use of parallel processing in this domain has been limited by the availability of applications that exploit parallel architectures, as well as a historic lack of IT training in the life sciences. Presented is an evaluation of several computing clusters using two different gene sequence search applications capable of utilizing a parallel processing architecture (ParAlign and mpiBLAST). The objective of the study is to evaluate the utility of these dedicated gene searching applications (developed for parallel computing architectures) on different parallel computing systems. Results demonstrate the performance variability between parallel processing systems, as well as the differences between gene sequence searching applications in a cluster computing environment.