Scalable Approaches for Supporting MPI-IO Atomicity

  • Authors:
  • Peter M. Aarestad;Avery Ching;George K. Thiruvathukal;Alok N. Choudhary

  • Affiliations:
  • Northwestern University, USA;Northwestern University, USA;Northwestern University, USA;Northwestern University, USA

  • Venue:
  • CCGRID '06 Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid
  • Year:
  • 2006

Quantified Score

Hi-index 0.00

Visualization

Abstract

Scalable atomic and parallel access to noncontiguous regions of a file is essential to exploit high performance I/O as required by large-scale applications. Parallel I/O frameworks such as MPI I/O conceptually allow I/O to be defined on regions of a file using derived datatypes. Access to regions of a file can be automatically computed on a perprocessor basis using the datatype, resulting in a list of (offset, length) pairs. We describe three approaches for implementing lock serving (whole file, region locking, and byterange locking) and compare the various approaches using three noncontiguous I/O benchmarks. We present the details of the lock server architecture and describe the implementation of a fully-functional prototype that makes use of a lightweight message passing library and red/black trees.