A time-efficient, linear-space local similarity algorithm
Advances in Applied Mathematics
Pad++: a zooming graphical interface for exploring alternate interface physics
UIST '94 Proceedings of the 7th annual ACM symposium on User interface software and technology
Space-scale diagrams: understanding multiscale interfaces
CHI '95 Proceedings of the SIGCHI Conference on Human Factors in Computing Systems
User controlled overviews of an image library: a case study of the visible human
Proceedings of the first ACM international conference on Digital libraries
Jazz: an extensible zoomable user interface graphics toolkit in Java
UIST '00 Proceedings of the 13th annual ACM symposium on User interface software and technology
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems
Image-Browser Taxonomy and Guidelines for Designers
IEEE Software
IEEE Intelligent Systems
The Generalized Detail-In-Context Problem
INFOVIS '98 Proceedings of the 1998 IEEE Symposium on Information Visualization
Visualization of Biological Sequence Similarity Search Results
VIS '95 Proceedings of the 6th conference on Visualization '95
Organization overviews and role management: inspiration for future desktop environments
WET-ICE '95 Proceedings of the 4th Workshop on Enabling Technologies: Infrastructure for Collaborative Enterprises (WET-ICE'95)
Rapid, serial and visual: a presentation technique with potential
Information Visualization
Visualization of near-optimal sequence alignments
Bioinformatics
Sequential patterns mining and gene sequence visualization to discover novelty from microarray data
Journal of Biomedical Informatics
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System modeling and analysis is an imperfect art and as a consequence there are problems where alternative solutions may exist. Information visualization is often used to enhance system modeling and analysis efforts by taking advantage of human perceptual capabilities. Our research uses visual representations of alternative solutions as a way to aid understanding and foster insight into problems, their solutions, and the underlying algorithms. Specifically, our system visualizes large sets of near-optimal protein sequence alignments. Prior efforts focused on the visualization of near-optimal alignments, using an animation metaphor for providing context to detailed displays. This paper discusses novel extensions: (1) a new overview display, the enhanced path graph; (2) the integration of the detail-oriented (animation) and overview-oriented (path graph) displays; and (3) additional human-computer interaction capabilities for filtering, highlighting, and mixed-initiative interaction that allow researchers to combine their expertise with algorithmic output to gain insight into the sequence alignment algorithms and the problem domain. Two case studies illustrate the effectiveness of this system.