Approaches to text mining for clinical medical records

  • Authors:
  • Xiaohua Zhou;Hyoil Han;Isaac Chankai;Ann Prestrud;Ari Brooks

  • Affiliations:
  • Drexel University, Philadelphia, PA;Drexel University, Philadelphia, PA;Drexel University, Philadelphia, PA;Drexel University, Philadelphia, PA;Drexel University, Philadelphia, PA

  • Venue:
  • Proceedings of the 2006 ACM symposium on Applied computing
  • Year:
  • 2006

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Abstract

Clinical medical records contain a wealth of information, largely in free-text form. Means to extract structured information from free-text records is an important research endeavor. In this paper, we describe a MEDical Information Extraction (MedIE) system that extracts and mines a variety of patient information with breast complaints from free-text clinical records. MedIE is a part of medical text mining project being conducted in Drexel University. Three approaches are proposed to solve different IE tasks and very good performance (precision and recall) was achieved. A graph-based approach which uses the parsing result of link-grammar parser was invented for relation extraction; high accuracy was achieved. A simple but efficient ontology-based approach was adopted to extract medical terms of interest. Finally, an NLP-based feature extraction method coupled with an ID3-based decision tree was used to perform text classification.