Modeling formalisms for dynamic structure systems
ACM Transactions on Modeling and Computer Simulation (TOMACS)
Communicating and mobile systems: the &pgr;-calculus
Communicating and mobile systems: the &pgr;-calculus
Theoretical Computer Science
Dynamic structures in modeling and simulation: a reflective approach
ACM Transactions on Modeling and Computer Simulation (TOMACS)
Theory of Modeling and Simulation
Theory of Modeling and Simulation
A component-based simulation layer for JAMES
Proceedings of the eighteenth workshop on Parallel and distributed simulation
Modeling of discrete event systems: A holistic and incremental approach using Petri nets
ACM Transactions on Modeling and Computer Simulation (TOMACS)
BioAmbients: an abstraction for biological compartments
Theoretical Computer Science - Special issue: Computational systems biology
Developing An Hierarchical Simulator for Beta-binders
Proceedings of the 20th Workshop on Principles of Advanced and Distributed Simulation
Introducing variable ports and multi-couplings for cell biological modeling in DEVS
Proceedings of the 38th conference on Winter simulation
A Spatial Extension to the π Calculus
Electronic Notes in Theoretical Computer Science (ENTCS)
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The goal of Systems Biology is to analyze the behavior and interrelationships between entities of entire functional biological systems. Discrete event approaches are of particular interest if small numbers of entities, like DNA molecules, shall be modeled. Two general approaches toward discrete event modeling and simulation are presented. They provide rather different perspectives on the system to be modeled, as is illustrated based on a model of the Trypophan Operon. Whereas in Devs distinctions are emphasized, e.g. between system and its environment, between structural and non structural changes, between properties attributed to a system and the system itself, these distinctions become fluent in the compact description of the π-Calculus. However, both share the problem that in order to support a comfortable modeling, adaptations and extensions according to the concrete requirements of this challenging application area are needed.