Assessing the impact of network depth on the analysis of PPI networks: a case study
CIBCB'09 Proceedings of the 6th Annual IEEE conference on Computational Intelligence in Bioinformatics and Computational Biology
Protein-to-protein interactions: Technologies, databases, and algorithms
ACM Computing Surveys (CSUR)
IEEE Transactions on Information Technology in Biomedicine
Protein Interactions for Functional Genomics
International Journal of Knowledge Discovery in Bioinformatics
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Summary: We present a software framework and tool called Protein Interactions And Network Analysis (PIANA) that facilitates working with protein interaction networks by (1) integrating data from multiple sources, (2) providing a library that handles graph-related tasks and (3) automating the analysis of protein--protein interaction networks. PIANA can also be used as a stand-alone application to create protein interaction networks and perform tasks such as predicting protein interactions and helping to identify spots in a 2D electrophoresis gel. Availability: PIANA is under the GNU GPL. Source code, database and detailed documentation may be freely downloaded from http://sbi.imim.es/piana. Contact:ramon.aragues@upf.edu; boliva@imim.es