DRTF: a database of rice transcription factors

  • Authors:

  • Ge Gao;Yingfu Zhong;Anyuan Guo;Qihui Zhu;Wen Tang;Weimou Zheng;Xiaocheng Gu;Liping Wei;Jingchu Luo

  • Affiliations:

  • Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;The Institute of Theoretical Physics, Chinese Academy of Sciences Beijing 100080, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China;Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China

  • Venue:
  • Bioinformatics
  • Year:
  • 2006

Quantified Score

Hi-index 3.84

Visualization

Abstract

Summary: DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface. Availability: DRTF is available at http://drtf.cbi.pku.edu.cn Contact: drtf@mail.cbi.pku.edu.cn