Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data

  • Authors:

  • Fei Pan;Kiran Kamath;Kangyu Zhang;Sudip Pulapura;Avinash Achar;Juan Nunez-Iglesias;Yu Huang;Xifeng Yan;Jiawei Han;Haiyan Hu;Min Xu;Jianjun Hu;Xianghong Jasmine Zhou

  • Affiliations:

  • Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Department of Computer Science, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA;Department of Computer Science, University of Illinois at Urbana-Champaign Urbana, IL 61801, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA;Program in Molecular and Computational Biology, University of Southern California Los Angeles, USA

  • Venue:
  • Bioinformatics
  • Year:
  • 2006

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Abstract

Summary: The rapid accumulation of microarray data translates into an urgent need for tools to perform integrative microarray analysis. Integrative Array Analyzer is a comprehensive analysis and visualization software toolkit, which aims to facilitate the reuse of the large amount of cross-platform and cross-species microarray data. It is composed of the data preprocess module, the co-expression analysis module, the differential expression analysis module, the functional and transcriptional annotation module and the graph visualization module. Availability: http://zhoulab.usc.edu Contact: xjzhou@usc.edu