Integrating biomedical literature clustering and summarization approaches using biomedical ontology

  • Authors:
  • Illhoi Yoo;Xiaohua Hu;Il-Yeol Song

  • Affiliations:
  • University of Missouri-Columbia, Columbia, MO;Drexel University, Philadelphia, PA;Drexel University, Philadelphia, PA

  • Venue:
  • TMBIO '06 Proceedings of the 1st international workshop on Text mining in bioinformatics
  • Year:
  • 2006

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Abstract

We introduce a method that integrates biomedical literature clustering and summarization using biomedical ontology. The core of the approach is to identify document cluster models as semantic chunks capturing the core semantic relationships in the ontology-enriched scale-free graphical representation of documents. These document cluster models are used for both document clustering on document assignment and text summarization on the construction of Text Semantic Interaction Network (TSIN). Our experimental results show our approach is superior to traditional approaches including Bisecting K-means as a leading document clustering approach in terms of cluster quality and clustering reliability. In addition, our approach provides concise but rich text summary in key concepts and sentences.