Kernel-based learning for biomedical relation extraction
Journal of the American Society for Information Science and Technology
Expert Systems with Applications: An International Journal
A graph kernel for protein-protein interaction extraction
BioNLP '08 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Learning the scope of hedge cues in biomedical texts
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Seeded discovery of base relations in large corpora
EMNLP '08 Proceedings of the Conference on Empirical Methods in Natural Language Processing
Assigning roles to protein mentions: The case of transcription factors
Journal of Biomedical Informatics
ICIC'07 Proceedings of the intelligent computing 3rd international conference on Advanced intelligent computing theories and applications
COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics: Posters
Extracting relations between diseases, treatments, and tests from clinical data
Canadian AI'11 Proceedings of the 24th Canadian conference on Advances in artificial intelligence
Tree kernel-based protein-protein interaction extraction from biomedical literature
Journal of Biomedical Informatics
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Automated information extraction systems from biomedical text have been reported. Some systems are based on manually developed rules or pattern matching. Manually developed rules are specific for analysis, however, new rules must be developed for each new domain. Although the corpus must be developed by human effort, a machine-learning approach automatically learns the rules from the corpus. In this article, we present a system for automatically extracting protein-protein interaction information from biomedical text with support vector machines (SVMs). We describe the performance of our system and compare its ability to extract protein-protein interaction information with that of other systems.