2-tree probe interval graphs have a large obstruction set

  • Authors:
  • Nataša Pržulj;Derek G. Corneil

  • Affiliations:
  • Department of Computer Science, University of Toronto, Toronto, Ont., Canada;Department of Computer Science, University of Toronto, Toronto, Ont., Canada

  • Venue:
  • Discrete Applied Mathematics - Special issue: Max-algebra
  • Year:
  • 2005

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Abstract

Probe interval graphs (PIGs) are used as a generalization of interval graphs in physical mapping of DNA. G = (V, E) is a probe interval graph (PIG) with respect to a partition (P, N) of V if vertices of G correspond to intervals on a real line and two vertices are adjacent if and only if their corresponding intervals intersect and at least one of them is in P; vertices belonging to P are called probes and vertices belonging to N are called non-probes. One common approach to studying the structure of a new family of graphs is to determine if there is a concise family of forbidden induced subgraphs. It has been shown that there are two forbidden induced subgraphs that characterize tree PIGs. In this paper we show that having a concise forbidden induced subgraph characterization does not extend to 2-tree PIGs; in particular, we show that there are at least 62 minimal forbidden induced subgraphs for 2-tree PIGs.