A translation approach to portable ontology specifications
Knowledge Acquisition - Special issue: Current issues in knowledge modeling
An overview of the object protocol model (OPM) and the OPM data management tools
Information Systems - Special issue: databases: their creation, management and utilization
Query caching and optimization in distributed mediator systems
SIGMOD '96 Proceedings of the 1996 ACM SIGMOD international conference on Management of data
An overview of data warehousing and OLAP technology
ACM SIGMOD Record
Ariadne: a system for constructing mediators for Internet sources
SIGMOD '98 Proceedings of the 1998 ACM SIGMOD international conference on Management of data
The entity-relationship model—toward a unified view of data
ACM Transactions on Database Systems (TODS) - Special issue: papers from the international conference on very large data bases: September 22–24, 1975, Framingham, MA
A relational model of data for large shared data banks
Communications of the ACM
XML Pocket Reference
Heterogeneous database integration in biomedicine
Computers and Biomedical Research
Optimizing Queries Across Diverse Data Sources
VLDB '97 Proceedings of the 23rd International Conference on Very Large Data Bases
Querying Heterogeneous Information Sources Using Source Descriptions
VLDB '96 Proceedings of the 22th International Conference on Very Large Data Bases
Optimizing Recursive Information-Gathering Plans
IJCAI '99 Proceedings of the Sixteenth International Joint Conference on Artificial Intelligence
The Piazza peer data management project
ACM SIGMOD Record
The hyperion project: from data integration to data coordination
ACM SIGMOD Record
Journal of Biomedical Informatics
A reference ontology for biomedical informatics: the foundational model of anatomy
Journal of Biomedical Informatics - Special issue: Unified medical language system
DiscoveryLink: a system for integrated access to life sciences data sources
IBM Systems Journal - Deep computing for the life sciences
Bioinformatics integration and agent technology
Journal of Biomedical Informatics
DataFoundry: information management for scientific data
IEEE Transactions on Information Technology in Biomedicine
Guest Editorial: Bio*Medical informatics and genomic medicine: Research and training
Journal of Biomedical Informatics
Journal of Biomedical Informatics
Metamodeling integration architecture for open biomedical ontologies: the GO extensions' case study
ER '07 Tutorials, posters, panels and industrial contributions at the 26th international conference on Conceptual modeling - Volume 83
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
Journal of Biomedical Informatics
Journal of Biomedical Informatics
Translational integrity and continuity: Personalized biomedical data integration
Journal of Biomedical Informatics
SNPit: A federated data integration system for the purpose of functional SNP annotation
Computer Methods and Programs in Biomedicine
Multiagent Framework for Bio-data Mining
RSKT '09 Proceedings of the 4th International Conference on Rough Sets and Knowledge Technology
Ontology - supported machine learning and decision support in biomedicine
DILS'07 Proceedings of the 4th international conference on Data integration in the life sciences
Classification integration and reclassification using constraint databases
Artificial Intelligence in Medicine
Reference model and perspective schemata inference for enterprise data integration
INAP'09 Proceedings of the 18th international conference on Applications of declarative programming and knowledge management
Improving data quality by source analysis
Journal of Data and Information Quality (JDIQ)
Multidimensional integrated ontologies: a framework for designing semantic data warehouses
Journal on Data Semantics XIII
Chapter 15: search computing and the life sciences
Search Computing
International Journal of Information Management: The Journal for Information Professionals
Barriers to task-based information access in molecular medicine
Journal of the American Society for Information Science and Technology
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Genomic medicine aims to revolutionize health care by applying our growing understanding of the molecular basis of disease. Research in this arena is data intensive, which means data sets are large and highly heterogeneous. To create knowledge from data, researchers must integrate these large and diverse data sets. This presents daunting informatic challenges such as representation of data that is suitable for computational inference (knowledge representation), and linking heterogeneous data sets (data integration). Fortunately, many of these challenges can be classified as data integration problems, and technologies exist in the area of data integration that may be applied to these challenges. In this paper, we discuss the opportunities of genomic medicine as well as identify the informatics challenges in this domain. We also review concepts and methodologies in the field of data integration. These data integration concepts and methodologies are then aligned with informatics challenges in genomic medicine and presented as potential solutions. We conclude this paper with challenges still not addressed in genomic medicine and gaps that remain in data integration research to facilitate genomic medicine.