Kaikoura tree theorems: computing the maximum agreement subtree
Information Processing Letters
Tree Contractions and Evolutionary Trees
SIAM Journal on Computing
Fast comparison of evolutionary trees
SODA '94 Proceedings of the fifth annual ACM-SIAM symposium on Discrete algorithms
Determining the evolutionary tree
SODA '90 Proceedings of the first annual ACM-SIAM symposium on Discrete algorithms
An O(nlog n) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees
SIAM Journal on Computing
ESA '99 Proceedings of the 7th Annual European Symposium on Algorithms
An efficient reduction from constrained to unconstrained maximum agreement subtree
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
Hi-index | 0.89 |
This paper introduces the maximum constrained agreement subtree problem, which is a generalization of the classical maximum agreement subtree problem. This new problem is motivated by the understood constraint when we compare the evolutionary trees. We give an O(n log n)-time algorithm for solving the problem when the input trees are binary. The time complexity of our algorithm matches the fastest known algorithm for the maximum agreement subtree problem for binary trees.