Finding putative core promoter elements with position-dependent consensuses

Authors:
Yin-Fu Huang;Yi-Chao Jhan;Sing-Wu Liou
Affiliations:
Nat'l Yunlin Univ. of Sci. & Tech., Touliu, Yunlin, Taiwan;Nat'l Yunlin Univ. of Sci. & Tech., Touliu, Yunlin, Taiwan;Nat'l Yunlin Univ. of Sci. & Tech., Touliu, Yunlin, Taiwan
Venue:
Proceedings of the 2007 ACM symposium on Applied computing
Year:
2007

Citing 2
Cited 0

Data Mining: Concepts and Techniques

Data Mining: Concepts and Techniques
Synergy of human Pol II core promoter elements revealed by statistical sequence analysis

Bioinformatics

Quantified Score

Hi-index	0.00

Visualization

Abstract

So far, within the core promoter region, only five known core promoter elements were found to be involved in the transcription initiation. In this paper, we proposed a framework for finding putative core promoter elements in the core promoter sequences. After implementing the framework, we used EPD promoters as the datasets in the experiments, and identified the putative core promoter elements with functional positions. The experimental results demonstrated that our system is feasible and reliable, regardless of whatever species are.