Pattern Recognition Letters
Robust radial basis function neural networks
IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics
A parameter optimization method for radial basis function type models
IEEE Transactions on Neural Networks
An evolutionary approach for protein contact map prediction
EvoBIO'11 Proceedings of the 9th European conference on Evolutionary computation, machine learning and data mining in bioinformatics
A decision tree-based method for protein contact map prediction
EvoBIO'11 Proceedings of the 9th European conference on Evolutionary computation, machine learning and data mining in bioinformatics
Evolutionary protein contact maps prediction based on amino acid properties
HAIS'11 Proceedings of the 6th international conference on Hybrid artificial intelligent systems - Volume Part II
A NSGA-II algorithm for the residue-residue contact prediction
EvoBIO'12 Proceedings of the 10th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Protein contact map prediction using committee machine approach
International Journal of Data Mining and Bioinformatics
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Inter-residue contact map is an important two-dimensional representation of protein spatial structure, and has much potential application in the area of understanding protein fold mechanism. In the present note, a 19-bit binary input encoding strategy, integrating with residue pair conformational features (possible residue pairwise, residue classification, secondary structure, sequence length, and sequence separation information), is proposed for the purpose of capturing mapping relationship of protein sequence. Simulation results on a set of 61 hepatitis C virus (HCV) retrieved from the protein data bank (PDB) demonstrate that the proposed encoding scheme could precisely capture conformational patterns within HCV protein sequence. This promising result could provide some useful insights into the nature of HCV protein fold mechanism.