Conceptual Subtopic Identification in the Medical Domain
IBERAMIA '08 Proceedings of the 11th Ibero-American conference on AI: Advances in Artificial Intelligence
Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature
ESWC 2009 Heraklion Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and Applications
Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature
ESWC 2009 Heraklion Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and Applications
DEXA '09 Proceedings of the 20th International Conference on Database and Expert Systems Applications
Support tools for literature-based information access in molecular biology
Proceedings of the 3rd International Universal Communication Symposium
Measuring prediction capacity of individual verbs for the identification of protein interactions
Journal of Biomedical Informatics
Semantic techniques for the web
Ontology refinement for improved information retrieval
Information Processing and Management: an International Journal
Invited Paper: Semantic Web and Social Web heading towards Living Documents in the Life Sciences
Web Semantics: Science, Services and Agents on the World Wide Web
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
FAETON: Form Analysis and Extraction Tool for ONtology construction
International Journal of Computer Applications in Technology
NCBO Resource Index: Ontology-based search and mining of biomedical resources
Web Semantics: Science, Services and Agents on the World Wide Web
Semantic interoperability between literature and data resources: from genes to diseases
Proceedings of the ACM fifth international workshop on Data and text mining in biomedical informatics
Adding text mining workflows as web services to the BioCatalogue
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
Semantics-aware open information extraction in the biomedical domain
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
Analyzing genomic data: understanding the genome
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery
The Medical Semantic Web: Opportunities and Issues
International Journal of Information Technology and Web Engineering
PIMiner: a web tool for extraction of protein interactions from biomedical literature
International Journal of Data Mining and Bioinformatics
ProNormz - An integrated approach for human proteins and protein kinases normalization
Journal of Biomedical Informatics
Hi-index | 3.84 |
Motivation: Text-mining (TM) solutions are developing into efficient services to researchers in the biomedical research community. Such solutions have to scale with the growing number and size of resources (e.g. available controlled vocabularies), with the amount of literature to be processed (e.g. about 17 million documents in PubMed) and with the demands of the user community (e.g. different methods for fact extraction). These demands motivated the development of a server-based solution for literature analysis. Whatizit is a suite of modules that analyse text for contained information, e.g. any scientific publication or Medline abstracts. Special modules identify terms and then link them to the corresponding entries in bioinformatics databases such as UniProtKb/Swiss-Prot data entries and gene ontology concepts. Other modules identify a set of selected annotation types like the set produced by the EBIMed analysis pipeline for proteins. In the case of Medline abstracts, Whatizit offers access to EBI's in-house installation via PMID or term query. For large quantities of the user's own text, the server can be operated in a streaming mode ( http://www.ebi.ac.uk/webservices/whatizit). Contact: rebholz@ebi.ac.uk