A first look at HealthCyberMap medical semantic subject search engine
Technology and Health Care
MedicoPort: A medical search engine for all
Computer Methods and Programs in Biomedicine
A review of ontology based query expansion
Information Processing and Management: an International Journal
Text processing through Web services
Bioinformatics
State of the nation in data integration for bioinformatics
Journal of Biomedical Informatics
Collecting Community-Based Mappings in an Ontology Repository
ISWC '08 Proceedings of the 7th International Conference on The Semantic Web
Semantic annotation for knowledge management: Requirements and a survey of the state of the art
Web Semantics: Science, Services and Agents on the World Wide Web
CONANN: an online biomedical concept annotator
DILS'07 Proceedings of the 4th international conference on Data integration in the life sciences
Optimize first, buy later: analyzing metrics to ramp-up very large knowledge bases
ISWC'10 Proceedings of the 9th international semantic web conference on The semantic web - Volume Part I
Using SPARQL to query bioportal ontologies and metadata
ISWC'12 Proceedings of the 11th international conference on The Semantic Web - Volume Part II
Linking data in and outside a scientific publishing house
Proceedings of the 22nd international conference on World Wide Web companion
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The volume of publicly available data in biomedicine is constantly increasing. However, these data are stored in different formats and on different platforms. Integrating these data will enable us to facilitate the pace of medical discoveries by providing scientists with a unified view of this diverse information. Under the auspices of the National Center for Biomedical Ontology (NCBO), we have developed the Resource Index - a growing, large-scale ontology-based index of more than twenty heterogeneous biomedical resources. The resources come from a variety of repositories maintained by organizations from around the world. We use a set of over 200 publicly available ontologies contributed by researchers in various domains to annotate the elements in these resources. We use the semantics that the ontologies encode, such as different properties of classes, the class hierarchies, and the mappings between ontologies, in order to improve the search experience for the Resource Index user. Our user interface enables scientists to search the multiple resources quickly and efficiently using domain terms, without even being aware that there is semantics ''under the hood.''