Answering queries using views: A survey
The VLDB Journal — The International Journal on Very Large Data Bases
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
BIBE '01 Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering
A Semantic Web Primer
K2/Kleisli and GUS: experiments in integrated access to genomic data sources
IBM Systems Journal - Deep computing for the life sciences
The Montagues and the Capulets: Conference Papers
Comparative and Functional Genomics
UTOPIA— user-friendly tools for operating informatics applications: Conference Reviews
Comparative and Functional Genomics
Principles of dataspace systems
Proceedings of the twenty-fifth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems
Aggregation of bioinformatics data using Semantic Web technology
Web Semantics: Science, Services and Agents on the World Wide Web
The Data Playground: An Intuitive Workflow Specification Environment
E-SCIENCE '07 Proceedings of the Third IEEE International Conference on e-Science and Grid Computing
Using Ontologies and Vocabularies for Dynamic Linking
IEEE Internet Computing
Sindice.com: weaving the open linked data
ISWC'07/ASWC'07 Proceedings of the 6th international The semantic web and 2nd Asian conference on Asian semantic web conference
DBpedia: a nucleus for a web of open data
ISWC'07/ASWC'07 Proceedings of the 6th international The semantic web and 2nd Asian conference on Asian semantic web conference
Piggy bank: experience the semantic web inside your web browser
ISWC'05 Proceedings of the 4th international conference on The Semantic Web
Characterizing the semantic web on the web
ISWC'06 Proceedings of the 5th international conference on The Semantic Web
Bio2RDF: A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse
DILS '08 Proceedings of the 5th international workshop on Data Integration in the Life Sciences
Guest Editorial: Semantic mashup of biomedical data
Journal of Biomedical Informatics
A methodology for quality-based mashup of data sources
Proceedings of the 10th International Conference on Information Integration and Web-based Applications & Services
Guest editorial: Computational intelligence and machine learning in bioinformatics
Artificial Intelligence in Medicine
DynamicFlow: A Client-Side Workflow Management System
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
Survey of modular ontology techniques and their applications in the biomedical domain
Integrated Computer-Aided Engineering - Selected papers from the IEEE Conference on Information Reuse and Integration (IRI), July 13-15, 2008
OpenFlyData: The Way to Go for Biological Data Integration
DILS '09 Proceedings of the 6th International Workshop on Data Integration in the Life Sciences
Detecting Inconsistencies in the Gene Ontology Using Ontology Databases with Not-gadgets
OTM '09 Proceedings of the Confederated International Conferences, CoopIS, DOA, IS, and ODBASE 2009 on On the Move to Meaningful Internet Systems: Part II
Journal of Biomedical Informatics
Exposing the cancer genome atlas as a SPARQL endpoint
Journal of Biomedical Informatics
A systematic approach to the integration of overlapping partitions in service-oriented data grids
Future Generation Computer Systems
Designing an architecture for improving web query processing in heterogeneous databases access
Proceedings of the International Conference on Web Intelligence, Mining and Semantics
Variation of background knowledge in an industrial application of ILP
ILP'10 Proceedings of the 20th international conference on Inductive logic programming
NCBO Resource Index: Ontology-based search and mining of biomedical resources
Web Semantics: Science, Services and Agents on the World Wide Web
Search, adapt, and reuse: the future of scientific workflows
ACM SIGMOD Record
Using ontology databases for scalable query answering, inconsistency detection, and data integration
Journal of Intelligent Information Systems
Semantic integration of information about orthologs and diseases: The OGO system
Journal of Biomedical Informatics
COEUS: a semantic web application framework
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
Challenges storing and representing biomedical data
USAB'11 Proceedings of the 7th conference on Workgroup Human-Computer Interaction and Usability Engineering of the Austrian Computer Society: information Quality in e-Health
Multivariate methods for the integration and visualization of omics data
JBI'10 Proceedings of the 10th Spanish conference on Bioinformatics for Personalized Medicine
Semantic annotation of image processing tools
Proceedings of the 2nd International Conference on Web Intelligence, Mining and Semantics
Reusable decision space for mashup tool design
Proceedings of the 4th ACM SIGCHI symposium on Engineering interactive computing systems
Cancer data integration and querying with genetegra
DILS'12 Proceedings of the 8th international conference on Data Integration in the Life Sciences
A Query Integrator and Manager for the Query Web
Journal of Biomedical Informatics
Indeterministic Handling of Uncertain Decisions in Deduplication
Journal of Data and Information Quality (JDIQ) - Special Issue on Entity Resolution
| Hi-index | 0.00 |
Data integration is a perennial issue in bioinformatics, with many systems being developed and many technologies offered as a panacea for its resolution. The fact that it is still a problem indicates a persistence of underlying issues. Progress has been made, but we should ask ''what lessons have been learnt?'', and ''what still needs to be done?'' Semantic Web and Web 2.0 technologies are the latest to find traction within bioinformatics data integration. Now we can ask whether the Semantic Web, mashups, or their combination, have the potential to help. This paper is based on the opening invited talk by Carole Goble given at the Health Care and Life Sciences Data Integration for the Semantic Web Workshop collocated with WWW2007. The paper expands on that talk. We attempt to place some perspective on past efforts, highlight the reasons for success and failure, and indicate some pointers to the future.