Active Learning for High Throughput Screening

  • Authors:
  • Kurt Grave;Jan Ramon;Luc Raedt

  • Affiliations:
  • Katholieke Universiteit Leuven, Leuven, Belgium 3001;Katholieke Universiteit Leuven, Leuven, Belgium 3001;Katholieke Universiteit Leuven, Leuven, Belgium 3001

  • Venue:
  • DS '08 Proceedings of the 11th International Conference on Discovery Science
  • Year:
  • 2008

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Abstract

An important task in many scientific and engineering disciplines is to set up experiments with the goal of finding the best instances (substances, compositions, designs) as evaluated on an unknown target function using limited resources. We study this problem using machine learning principles, and introduce the novel task of active k-optimization. The problem consists of approximating the kbest instances with regard to an unknown function and the learner is active, that is, it can present a limited number of instances to an oracle for obtaining the target value. We also develop an algorithm based on Gaussian processes for tackling active k-optimization, and evaluate it on a challenging set of tasks related to structure-activity relationship prediction.