Semantic enrichment of journal articles using chemical named entity recognition

Authors:
Colin R. Batchelor;Peter T. Corbett
Affiliations:
Royal Society of Chemistry, Cambridge, UK;University Chemical Laboratory, Cambridge, UK
Venue:
ACL '07 Proceedings of the 45th Annual Meeting of the ACL on Interactive Poster and Demonstration Sessions
Year:
2007

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Abstract

We describe the semantic enrichment of journal articles with chemical structures and biomedical ontology terms using Oscar, a program for chemical named entity recognition (NER). We describe how Oscar works and how it can been adapted for general NER. We discuss its implementation in a real publishing workflow and possible applications for enriched articles.