Extraction of chemical reaction information from primary journal text
Journal of Chemical Information & Computer Sciences
HLT-SRWS '04 Proceedings of the Student Research Workshop at HLT-NAACL 2004
Semantic enrichment of journal articles using chemical named entity recognition
ACL '07 Proceedings of the 45th Annual Meeting of the ACL on Interactive Poster and Demonstration Sessions
Annotation of chemical named entities
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Identification of Chemical Entities in Patent Documents
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
A system for semantic analysis of chemical compound names
ACLstudent '09 Proceedings of the ACL-IJCNLP 2009 Student Research Workshop
Exposing the hidden web for chemical digital libraries
Proceedings of the 10th annual joint conference on Digital libraries
Using Wikipedia categories for compact representations of chemical documents
CIKM '10 Proceedings of the 19th ACM international conference on Information and knowledge management
Identifying, Indexing, and Ranking Chemical Formulae and Chemical Names in Digital Documents
ACM Transactions on Information Systems (TOIS)
Taking chemistry to the task: personalized queries for chemical digital libraries
Proceedings of the 11th annual international ACM/IEEE joint conference on Digital libraries
Overview of the infectious diseases (ID) task of BioNLP Shared Task 2011
BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop
Effective query generation and postprocessing strategies for prior art patent search
Journal of the American Society for Information Science and Technology
Building trainable taggers in a web-based, UIMA-supported NLP workbench
ACL '12 Proceedings of the ACL 2012 System Demonstrations
Catching the drift --- indexing implicit knowledge in chemical digital libraries
TPDL'12 Proceedings of the Second international conference on Theory and Practice of Digital Libraries
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OSCAR3 is an open extensible system for the automated annotation of chemistry in scientific articles, which can process thousands of articles per hour. This XML annotation supports applications such as interactive browsing and chemically-aware searching, and has been designed for integration with larger text-analysis systems. We report its application to the high-throughput analysis of the small-molecule chemistry content of texts in life sciences, such as PubMed abstracts.